Do plant clumps constitute microbial hotspots in semiarid Mediterranean patchy landscapes?

Three semiarid Mediterranean patchy landscapes were investigated to test the existence of a microsite effect (i.e. plant canopy vs. inter-canopy) on soil microbial communities. Surface soil samples were independently taken from both microsites under naturally changing conditions of humidity and temperature through the year. In gypsiferous soils covered with a shrub steppe, improved physical and chemical soil properties were registered underneath the plant canopy, where the densest and most active microbial communities were also detected (e.g. microbial biomass C averaged 531 and 202 mg kg⁻¹ in canopy and inter-canopy areas, respectively). In calcareous perennial tussock grasslands, either growing on soils over limestones or alluvial deposits, the microsite effect was not so marked. Soil humidity, temperature and total organic C were homogeneously distributed over the landscape conditioning their uniform microbial activity under field moisture conditions (ATP content averaged 853 and 885 nmol kg⁻¹ in canopy and intercanopy areas, respectively). However, readily mineralizable C and microbial biomass C were preferentially accumulated in soils underneath the tussocks determining their larger potential microbial activity (e.g. C hydrolysis capacity under optimal conditions). In conclusion, plant clumps either functioned as microbial hotspots where enhanced microbially driven ecosystem processes took place or as microbial banks capable of undergoing a burst of activity under favourable climatic conditions. Our results provide experimental evidence of a non-patchy distribution of certain soil microbial properties in semi-arid Mediterranean patchy ecosystems.     

Use of the BCR three-step sequential extraction procedure for the study of the partitioning of Cd, Pb and Zn in various soil samples

A slightly modified three-step sequential extraction procedure proposed by the Community Bureau of Reference (BCR) for analysis of sediments was successfully applied to soil samples. Contaminated soil samples from the lead and zinc mining area in the Mezica valley (Slovenia) and natural soils from a non-industrial area were analysed. The total concentrations of Cd, Pb and Zn and their concentrations in fractions after extraction were determined by flame or electrothermal atomic absorption spectrometry (FAAS, ETAAS). Total metal concentrations in natural soils ranged from 0.3 to 2.6 mg kg^-1 for Cd, from 20 to 45 mg kg^-1 for Pb and from 70 to 140 mg kg^-1 for Zn, while these concentrations ranged from 0.5 to 35 mg kg^-1 for Cd, from 200 to 10000 mg kg^-1 for Pb and from 140 to 1500 mg kg^-1 for Zn in soils from contaminated areas. The results of the partitioning study applying the slightly modified BCR three-step extraction procedure indicate that Cd, Pb and Zn in natural soils prevails mostly in sparingly soluble fractions. Cd in natural soils is bound mainly to Fe and Mn oxides and hydroxides, Pb to organic matter, sulphides and silicates, while Zn is predominantly bound to silicates. In contaminated soils, Cd, Pb and Zn are distributed between the easily and sparingly soluble fractions. Due to the high total Cd, Pb and Zn concentrations in contaminated soil close to the smelter, ! and their high proportions in the easily soluble fraction (80% of Cd, 50% of Pb and 70% of Zn), the soil around smelters represents an environmental hazard.     

Use of poultry manure and plant cultivation for the reclamation of burnt soils

Annual (Pisum sativum L. and Vicia sativa L.) and perennial (Trifolium repens L. and Lotus corniculatus L.) leguminous species were grown in pots containing samples from the ash layers of two Cambisols under Pinus sylvestris L., which has been affected by high-intensity wildfires 3 and 15 days before the sampling. The gramineous Lolium perenne L. was cultivated as a second plant after Trifolium and Lotus harvesting. Three treatments were compared: soils without fertilization and soils fertilized with two doses of poultry manure (1 and 2 g total N kg^-1 dry soil). The aim of the work was to study the capacity of the ash layer to sustain vegetation and the influence of plants and organic manure on the recovery of vegetation cover, ash layer fixation and soil structure formation to avoid erosion. The ash samples were able to sustain vegetation without fertilization. The organic manure increased the yields of all the plants tested, the lower dose being the optimal for the first crop whereas the higher dose was beneficial for the second crop. The annual legumes grew very quickly. The mixture of Trifolium and Lotus seemed very suitable for reclamation of soil degraded by wildfires because Trifolium produced more phytomass than Lotus in the first growing stages whereas the development of Lotus was higher in the later growing stages. Ash layer conditions did not inhibit nodulation, which was, however, stimulated by the organic manure, particularly in the case of Lotus. Lolium after perennial legumes was the best plant combination because it produced the highest phytomass, particularly root phytomass, and thus improved vegetation cover and ash layer fixation. All the plants tested improved the formation of soil aggregates, particularly the combination of perennial legumes and Lolium. However, wet aggregate stability was higher when plants were grown on soils fertilized with poultry manure than when plants were cropped on unmanured soils, which points to the favourable influence of the organic manure on soil aggregation.     

Diversity of rhizobia isolated from an agricultural soil in Argentina based on carbon utilization and effects of herbicides on growth

Seventy-six rhizobial isolates belonging to four different genera were obtained from the root nodules of several legumes (Vicia sativa, Vicia faba, Medicago sativa, Melilotus sp., Glycine max and Lotus corniculatus). The action of five commonly used herbicides [2,4-dichlorophenoxyacetic acid (2,4-D), glyphosate (GF), dicamba, atrazine and metsulfuron-methyl] on the growth of rhizobial strains was assessed. Subsequently, GF and 2,4-D were tested in a minimum broth as C and energy sources for 20 tolerant strains. The ability of these strains to metabolize different carbon sources was studied in order to detect further differences among them. Tolerance of the bacteria to agrochemicals varied; 2,4-D and GF in solid medium inhibited and diminished growth, respectively, in slow-growing rhizobial strains. Among slow-growing strains we detected Bradyrhizobium sp. SJ140 that grew well in broth + GF as the sole C and energy source. No strain was found which could use 2,4-D as sole C source. The 20 strains studied exhibited different patterns of C sources utilization. Cluster analysis revealed three groups, corresponding to four genera of rhizobia: Rhizobium (group I), Sinorhizobium (group II) and Mesorhizobium–Bradyrhizobium (group III). On the basis of the results obtained on responses to herbicides and C sources utilization by the isolates investigated, it was possible to differentiate them at the level of strains. These results evidenced a considerable diversity in rhizobial populations that had not been previously described for Argentinean soils, and suggested a physiological potential to use natural and xenobiotic C sources.     

Chemical characteristics and potential source of fulvic acids leached from the plow layer of paddy soil

To understand better the chemical characteristics and source of dissolved organic matter (DOM) leached from the plow layer of rice paddies, a lysimeter study was conducted, which simulated submerged paddy topsoil during rice growth. The fulvic acid (FA) fraction in the percolation water from the lysimeter was collected by adsorption onto insoluble polyvinylpyrrolidone (PVP), and the temporal variations in its elemental composition, molecular size distribution, IR spectra, ¹³C CPMAS NMR spectra, and δ¹³C values were investigated. The proportion of the FA fraction to bulk DOM varied greatly, but the chemical characteristics of the FA fraction did not change appreciably during the experimental period. Thus, it is considered that the changes in the DOM composition in percolation water were mainly due to the differing contributions of the FA fraction. Further, to investigate the source of the FA fraction in the leachate, the chemical characteristics of the FA fraction in the leachate were compared with those extracted from the plow layer soil. A sequential extraction of the FA fraction was conducted using a sequence of water, 0.25 M Na₂SO₄, 0.1 M Na₄P₂O₇ (pH 7.0), 0.1 M Na₄P₂O₇ (pH 10.5), and NaBH₄+0.1 M Na₄P₂O₇ (pH 10.5). It was found that the water- and 0.25 M Na₂SO₄-extractable fractions, which were most mobile, were not the only source of the FA fraction in the leachate. The small molecular size sub-fraction of the NaBH₄+0.1 M Na₄P₂O₇ (pH 10.5)-extractable FAs, most of which are probably bound mainly to iron oxides, are considered to be another source of the FA fraction leached from the plow layer of paddy fields.     

Reciprocal transfer effects on denitrifying community composition and activity at forest and meadow sites in the Cascade Mountains of Oregon

In order to examine the effects of disturbance, vegetation type, and microclimate on denitrification and denitrifier community composition, experimental plots were established at the H. J. Andrews Experimental Forest in the Cascade Mountains of Oregon. Soil cores were reciprocally transplanted between meadow and forest and samples were collected after 1 and 2 years. Denitrifying enzyme activity (DEA) was measured using the acetylene block assay and terminal restriction length polymorphism profiles were generated with nosZ primers that target the gene coding for nitrous oxide reductase. Nitrate concentrations, C mineralization, and water content were measured to gain additional insights into soil properties controlling DEA. Meadow soils were significantly higher in DEA than forest soils, and the highest DEA levels were observed in cores transferred from the meadow into the forest. Nitrate concentrations were also different between forest and meadow soils, but did not correlate to DEA. DEA was higher in open versus closed cores, suggesting an association between denitrification and the rhizosphere. Denitrifier communities of undisturbed forest and meadow soils shifted through a 4-year period but remained distinct from each other. Similarly, denitrifier communities clustered by vegetation type of origin regardless of manipulation, suggesting that the overall denitrifier communities are well buffered against environmental changes.     

Soil microbial community characteristics along an elevation gradient in the Laguna Mountains of Southern California

We sampled soil at four sites in the Laguna Mountains in the western Sonoran Desert to test the effects of site and sample location (between or beneath plants) on fatty acid methyl ester (FAME) and carbon substrate ulilization (Biolog) profiles. The four sites differed in elevation, soil type, plant community composition, and plant percent cover. Soil pH decreased and plant density increased with elevation. Fertile islands, defined as areas beneath plants with greater soil resources than bare areas, are present at all sites, but are most pronounced at lower elevations. Consistent with this pattern, fertile islands had the greatest influence on FAME and Biolog profiles at lower elevations. Based on the use of FAME biomarker and principal components analyses, we found that soil microbial communities between plants at the lowest elevation had proportionally more Gram-negative bacteria than all other soils. At the higher elevation sites there were few differences in FAME profiles of soils sampled between vs. beneath plants. Differences in FAME profiles under plants among the four sites were small, suggesting that the plant influence per se is more important than plant type in controlling FAME profiles. Since microbial biomass carbon was correlated with FAME number (r=0.85,P<0.0001) and with FAME named (r=0.88,P<0.0001) and total areas (r=0.84,P<0.0001), we standardized the FAME data to ensure that differences in FAME profiles among samples were not the result of differences in microbial biomass. Differences in microbial substrate utilization profiles among sampling locations were greatest between samples taken under vs. between plants at the two lower elevation sites. Microbial substrate utilization profiles, therefore, also seem to be influenced more by the presence of plants than by specific plant type.     

Changes in soil microbial biomass and aggregate stability following burning and soil rehabilitation

A greenhouse experiment was conducted in order to determine the influence of organic amendment, as compared with inorganic fertilization, and vegetation cover (Lolium perennne L.) on microbial biomass and aggregate stability in burnt soils. The study was performed with soil samples from the ash layer of three pine forests differing in their physicochemical and chemical properties and affected by high-intensity wildfires about 3 and 36 months before the sampling. Two different doses of both poultry manure and NPK fertilizer were used. Similar results were observed independent of the soil; however, the fertilization effect was most pronounced in the soil collected 36 months after the wildfire. Significant increases in microbial biomass C were detected following poultry manure addition, particularly at high dose, while no changes or slight increases were found as a consequence of inorganic fertilization. A significant but varied response of microorganisms to plant growing was also observed. Revegetation and fertilization also modified the aggregate stability values, but different effects were detected depending on the fertilizer used (organic or inorganic) and the dose of application. A high positive and significant relationship between soil microbial biomass and aggregate stability was observed. The results clearly indicate that organic amendment combined with the implantation of a vegetation cover can improve the reestablishment of both microbial biomass and soil structure in burnt pine forests.     

Dry farming with soils under natural tephra cover in Lanzarote, Spain

Abstract. The volcanic island of Lanzarote (Canary Islands, Spain) is one of the most arid parts of the European Union. During the eruptions of 1730–36, a third of the island was covered with lava and pyroclastic material. In areas under basaltic tephra, an agrosystem has been developed that allows a form of dry farming that has become a key component of the local economy. This article illustrates the effectiveness of the layer of natural tephra mulch in conserving soil and water.